Packages
A list of tools and R/Bioconductor packages that I have contributed to, either as a developer/maintainer or a occasional contributor:
| Package | Description | |
|---|---|---|
| EMMA |  |
Enrichment Methods Matter for enabling fully reproducible and provenance-aware pathway analysis |
| DeeDeeExperiment | An S4 class built on SingeCellExperiment for integrating and managing omics data analysis results |
|
| iSEEfier |  |
An R package for streamlining the creation of initial states for starting an iSEE instance |
| NeuroVar |  |
An open-source tool for the visualization of gene expression and variation data for biomarkers of neurological diseases |
| exvar |  |
An R Package for Gene Expression and Genetic Variation Data Analysis and Visualization |
| ROHStats | An R package for fast and easy ROH statistics and visualization from PLINK outputs |