Publications

Research Papers

Aribi, H. B., Dixon, I., Abassi, N., & Awe, O. I. (2025). Efficient and easy gene expression and genetic variation data analysis and visualization using exvar. Scientific Reports, 15(1). (doi)
Weinmann-Menke, J., Gonzalez-Sanchez, H. M., Iwata, Y., Meineck, M., Abassi, N., Marini, F., Granados-Contreras, F., Takakura, A., Noda, M., & Kelley, V. R. (2025). PTPRZ signaling, Tubule- and Macrophage-Mediated Kidney Injury, and subsequent CKD. Journal of the American Society of Nephrology. (doi)

Aribi, H. B., Abassi, N., & Awe, O. I. (2024). NeuroVar: an open-source tool for the visualization of gene expression and variation data for biomarkers of neurological diseases. Gigabyte, 2024. (doi)
Romdhane, L., Kefi, S., Mezzi, N., Abassi, N., Jmel, H., Romdhane, S., Shan, J., Chouchane, L., & Abdelhak, S. (2024). Ethnic and functional differentiation of copy number polymorphisms in Tunisian and HapMap population unveils insights on genome organizational plasticity. Scientific Reports, 14(1). (doi)

Mezzi, N., Abassi, N., Fatnassi, F., Abdelhak, S., & Romdhane, L. (2024). Consanguinité et son impact sur la santé et la dynamique du génome : Un exemple de la Tunisie. La Tunisie Médicale, 102(5). (doi)

Damara, A., Abassi, N., Mihoc, D., Nastaranpour, M., Kraft, P., Sarkar, T., Deppermann, C., Mayer, J. U., Grabbe, S., Delacher, M., Marini, F., & Shahneh, F. (2025). KDM6B inhibition modulates monocyte activation and alleviates IMQ-psoriasis skin inflammation. bioRxiv (Cold Spring Harbor Laboratory). (doi)
Nedwed, A., Ustjanzew, A., Abassi, N., Dammer, L., Schulze, A., Helbich, S., Delacher, M., Strauch, K., & Marini, F. (2025). GEDI: Simplifying gene set distances for Enhanced Omics Interpretation in R/Bioconductor. bioRxiv (Cold Spring Harbor Laboratory). (doi)

Legscha, K. J. J., Märker, L. P., Abassi, N., Yilmaz, A., Woelfel, C., Ferreira, E. A., Nedwed, A., Helbich, S. S., Delacher, M., Marini, F., Porubsky, S., Theobald, M., & Echchannaoui, H. (2024b). Deep cellular and molecular characterization reveal a distinct phenotype and metabolic signature of human senescent CD8+ T cells: Implication for cancer cellular therapy. Blood, 144(Supplement 1), 2536. (doi)
Hemberg, M., Marini, F., Ghazanfar, S., Ajami, A. A., Abassi, N., Anchang, B., Benayoun, B. A., Cao, Y., Chen, K., Cuesta-Astroz, Y., DeBruine, Z., Dendrou, C. A., Iwijn, D. V., Imkeller, K., Korsunsky, I., Lederer, A. R., Meysman, P., Miller, C., Mullan, K., . . . Jelic, I. (2024). Insights, opportunities and challenges provided by large cell atlases. arXiv (Cornell University). (doi)

Abassi, N., Rothörl, L., & Marini, F. (2025, September 17). One class to rule them all: DeeDeeExperiment for managing and exploring omics analysis results. European Bioconductor Conference 2025 (EuroBioC2025), Barcelona Biomedical Research Park (PRBB), Barcelona, Spain. Zenodo. (doi)