Publications

Research Papers

Abassi, N., Schwarz, L., Filippi, E., & Marini, F. (2026b). DeeDeeExperiment: Building an infrastructure for integrating and managing omics data analysis results in R/Bioconductor. Bioinformatics. (doi)

Nedwed, A. S., Ustjanzew, A., Abassi, N., Dammer, L., Schulze, A., Helbich, S. S., Delacher, M., Strauch, K., & Marini, F. (2025). GeDi: simplifying gene set distances for enhanced omics interpretation in R/Bioconductor. BMC Bioinformatics, 27(1), 14. (doi)
Hemberg, M., Marini, F., Ghazanfar, S., Ajami, A. A., Abassi, N., Anchang, B., Benayoun, B. A., Cao, Y., Chen, K., Cuesta-Astroz, Y., DeBruine, Z., Dendrou, C. A., De Vlaminck, I., Imkeller, K., Korsunsky, I., Lederer, A. R., Li, J. J., Meysman, P., Miller, C. L., . . . Jelic, I. (2025). Insights, opportunities, and challenges provided by large cell atlases. Genome Biology, 26(1), 358. (doi)
Aribi, H. B., Dixon, I., Abassi, N., & Awe, O. I. (2025). Efficient and easy gene expression and genetic variation data analysis and visualization using exvar. Scientific Reports, 15(1). (doi)
Weinmann-Menke, J., Gonzalez-Sanchez, H. M., Iwata, Y., Meineck, M., Abassi, N., Marini, F., Granados-Contreras, F., Takakura, A., Noda, M., & Kelley, V. R. (2025). PTPRZ signaling, Tubule- and Macrophage-Mediated Kidney Injury, and subsequent CKD. Journal of the American Society of Nephrology. (doi)

Aribi, H. B., Abassi, N., & Awe, O. I. (2024). NeuroVar: an open-source tool for the visualization of gene expression and variation data for biomarkers of neurological diseases. Gigabyte, 2024. (doi)
Mezzi, N., Abassi, N., Fatnassi, F., Abdelhak, S., & Romdhane, L. (2024). Consanguinité et son impact sur la santé et la dynamique du génome : Un exemple de la Tunisie. La Tunisie Médicale, 102(5). (doi)
Romdhane, L., Kefi, S., Mezzi, N., Abassi, N., Jmel, H., Romdhane, S., Shan, J., Chouchane, L., & Abdelhak, S. (2024). Ethnic and functional differentiation of copy number polymorphisms in Tunisian and HapMap population unveils insights on genome organizational plasticity. Scientific Reports, 14(1). (doi)

Rausch, J., Wendel, P., Dzama-Karels, M., Steiner, M., Gierschek, F., Fetsch, V., Knapp, L. R., Abassi, N., Kuhmann, M., Viehböck, L., Weisemann, S., Dolgikh, N., Habermann, J., Lahrmann, C., Klein, M., Delacher, M., Wölfel, C., Döhner, K., Döhner, H., . . . Kühn, M. W. (2026). Menin-Inhibition sensitizes acute myeloid leukemia to CLEC12A-Directed CAR cell therapy. bioRxiv (Cold Spring Harbor Laboratory). (doi)

Damara, A., Abassi, N., Mihoc, D., Nastaranpour, M., Kraft, P., Sarkar, T., Deppermann, C., Mayer, J. U., Grabbe, S., Delacher, M., Marini, F., & Shahneh, F. (2025). KDM6B inhibition modulates monocyte activation and alleviates IMQ-psoriasis skin inflammation. bioRxiv (Cold Spring Harbor Laboratory). (doi)

Legscha, K. J. J., Märker, L. P., Abassi, N., Yilmaz, A., Woelfel, C., Ferreira, E. A., Nedwed, A., Helbich, S. S., Delacher, M., Marini, F., Porubsky, S., Theobald, M., & Echchannaoui, H. (2024b). Deep cellular and molecular characterization reveal a distinct phenotype and metabolic signature of human senescent CD8+ T cells: Implication for cancer cellular therapy. Blood, 144(Supplement 1), 2536. (doi)

Abassi, N., Rothörl, L., & Marini, F. (2025, September 17). One class to rule them all: DeeDeeExperiment for managing and exploring omics analysis results. European Bioconductor Conference 2025 (EuroBioC2025), Barcelona Biomedical Research Park (PRBB), Barcelona, Spain. Zenodo. (doi)