A sample SingleCellExperiment object
A SingleCellExperiment object
Details on how this object has been created are included in the
create_iSEEfierWorkshop2024_data.R script, included in the (installed) inst/scripts
folder of the iSEEfierWorkshop2024 package. This is also available at
https://github.com/NajlaAbassi/iSEEfierWorkshop2024/devel/inst/scripts/create_iSEEfierWorkshop2024_data.R
This SingleCellExperiment object is obtained from the scRNAseq
package. It corresponds to the tophat_counts assay of the allen dataset.
This object was processed to have log-transformed counts as well as different dimentionality coordinates, including PCA, TSNE and UMAP.
Tasic et al. "Adult mouse cortical cell taxonomy revealed by single cell transcriptomics", Nature Neuroscience, January 2016 doi:10.1038/nn.4216